THERE ARE 6 TEXT FILES CONTAINING SUMMARY GENE EXPRESSION

A) IS THERE ARE THERE
ALZHEIMER’SDEMENTIA RESOURCES FOR FAMILIES THERE ARE MANY
THERE IS SIGNIFICA “HAY” PARA SINGULARES

1 ARE THERE ANY RESTRICTIONS ON THE RIGHTS OF
1 HALLENTRANCEWAY FINDING THERE IS PARTICULARLY CLEAR SIGNAGE TO
1 IF THERE’S A PERFORMANCE HAPPENING YOU’LL BE IN

There are 6 text files containing summary gene expression data from illumina 6 x 2 Human gene expression arrays

There are 6 text files containing summary gene expression data from illumina 6 x 2 Human gene expression arrays.


The files are:

1. CEUc_120_gene_profile.txt

30 CEPH HapMap children

30 individuals x 2 IVTs x 2 replicate hybridizations/IVT = 120 hybs


2. CEUp_240_gene_profile.txt

60 CEPH HapMap unrelated parents

60 individuals x 2 IVTs x 2 replicate hybridizations/IVT = 240 hybs


3. CHB_180_gene_profile.txt

45 CHB HapMap unrelated adults

45 individuals x 2 IVTs x 2 replicate hybridizations/IVT = 180 hybs


4. JPT_180_gene_profile.txt

45 JPT HapMap unrelated adults

45 individuals x 2 IVTs x 2 replicate hybridizations/IVT = 180 hybs


5. YRIc_120_gene_profile.txt

30 YRI HapMap children

30 individuals x 2 IVTs x 2 replicate hybridizations/IVT = 120 hybs


6. YRIp_240_gene_profile.txt

60 YRI HapMap unrelated parents

60 individuals x 2 IVTs x 2 replicate hybridizations/IVT = 240 hybs



Each file contains 7 lines of text before the start of the data. These lines contain information output from BeadStudio about the date the file was made, normalization method, etc. These lines can be ignored.


The data is arranged in 6 tab-delimited columns as output by BeadStudio with no normalization.


The column headings are:


GroupID: This is a unique identifier for a single hybridization to a chip.

The identifier contains information about the person (by NA number), the IVT and the replicate (of the IVT).

The form is NA#_IVT#_replicate#, e.g. NA18951_1_2


Each individual has 4 replicates in total (2 IVTs and 2 hybs/IVT).


TargetID: This is basically equivalent to the probeID. For the whole genome arrays, BeadStudio no longer outputs a numerical probeID identifier. Each TargetID is unique (there are 47,293 targets output for each hybridization).


AVG_Signal: Average intensity across all beads of a single TargetID.


BEAD_STDEV: Standard deviation of intensity values across all beads of a single Target ID.


Avg_NBEADS: Number of beads of a single TargetID.


Detection: probability of detection of a single TargetID.


1 SECTION 3112 UNIFORM ALLOWANCE (A) POLICE DEPARTMENT THERE
1 THE PARTICLES AND THEIR PROPERTIES THERE ARE TWO
1 WELCOME THERE IS A GREAT SIGNIFICANCE OF THE


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