S3 TREE BASED ON SHIRAI (1996) WINCHELL ET AL

SPATIOTEMPORAL FOCUSINGBASED WIDEFIELD MULTIPHOTON MICROSCOPY FOR FAST OPTICAL SECTIONING
MASTER SPECIFICATION BASED ON CSI MASTERFORMAT 2004 SECTION 075564
ICE BITE® SUGAR BEETBASED ANTIICING DEICING FLUID

IN PUBLIC HOUSING & SECTION 8 RESIDENTBASED
INITIAL TRAIL PLANNING QUESTIONNAIRE ROAD BASED CYCLING
JOB DESCRIPTION POSITION COMMUNITYBASED REHABILITATION COORDINATOR

SX

S3. Tree based on Shirai (1996), Winchell et al (2004) and Naylor et al (2005) [for elasmobranchs], Eitner (1995), De Carvalho (1996), Adnet and Cappetta (2001), Douady et al. (2003), Greig et al (2005), Iglesias et al (2005), Shimada (2005), Human et al (2006), Lopez et al (2006), and Cavalcanti (2007) [for “sharks”], and Lovejoy (1996), McEachran et al (1996), McEachran and Dunn (1998), Rosenberger (2001), Dunn et al (2003), and McEachran and Aschliman (2004) [for batoids].


Initially, phylogenetic relationships between classes and orders of elasmobranchs were drawn from Shirai (1996), Winchell et al (2004) and Naylor et al (2005). Interrelationships between orders of sharks were compared to De Carvalho (1996), Douady et al (2003) and Greig et al (2005) and those between orders of batoids to McEachran and Aschliman (2004) and McEachran et al (1996). When available, interrelationships within an order were mapped onto this tree: (1) Iglesias et al (2005), Human et al (2006), Lopez et al (2006) and Cavalcanti (2007) were consulted for the Carcharhiniformes; (2) Eitner (1995) and Shimada (2005) for the Lamniformes; (3) Lovejoy (1996), Rosenberger (2001) and Dunn et al (2003) for the Myliobatiformes; (4) McEachran and Dunn (1998) for the Rajiformes; and (5) Adnet and Capetta (2001) for the Squaliformes. Other orders and families for which no estimated phylogenies were available were collapsed and treated as polytomies.


References:

Adnet, S. and Cappetta, H. (2001) A palaeontological and phylogenetical analysis of squaliform sharks (Chondrichthyes: Squaliformes) based on dental characters. Lethaia, 34: 234-248.

Cavalcanti, M. J. (2007) A phylogenetic supertree of hammerhead sharks (Carcharhiniformes: Sphyrnidae). Zoological Studies, 46: 6-11.

De Carvalho, M. R. (1996) Higher-level elasmobranch phylogeny, basal squaleans, and paraphyly. In: Stiassny, M. L. J., Parenti, L. R. and Johnson. G. D. (eds), Interrelationships of fishes. Academic Press, pp. 35-62.

Douady, C. J., Dosay, M., Shivji, M. S. and Stanhope, M. J. (2003) Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks. Molecular Phylogenetics and Evolution, 26: 215-221.

Dunn, K. A., McEachran, J. D. and Honeycutt, R. L. (2003) Molecular phylogenetics of myliobatiform fishes (Chondrichthyes: Myliobatiformes), with comments on the effects of missing data on parsimony and likelihood. Molecular Phylogenetics and Evolution, 27: 259-270.

Eitner, B. J. (1995) Systematics of the genus Alopias (Lamniformes: Alopiidae) with evidence for the existence of an unrecognized species. Copeia, 1995: 562-571.

Greig, T. W., Moore, M. K., Woodley, C. M. and Quattro, J. M. (2005) Mitochondrial gene sequences useful for species identification of western North Atlantic ocean sharks. Fishery Bulletin, 103: 516-523.

Human, B. A., Owen, E. P., Compagno, L. J. V. and Harley, E. H. (2006) Testing morphologically based phylogenetic theories within the cartilaginous fishes with molecular data, with special reference to the catshark family (Chondrichthyes; Scyliorhinidae) and the interrelationships within them. Molecular Phylogenetics and Evolution, 39: 384-391.

Iglesias, S. P., Lecointre, G. and Sellos, D. Y. (2005) Extensive paraphylies within sharks of the order Carcharhiniformes inferred from nuclear and mitochondrial genes. Molecular Phylogenetics and Evolution, 34: 569-583.

Lopez, J. A., Ryburn, J. A., Fedrigo, O. and Naylor, G. J. P. (2006) Phylogeny of sharks of the family Triakidae (Carcharhiniformes) and its implications for the evolution of carcharhiniform placental viviparity. Molecular Phylogenetics and Evolution, 40: 50-60.

Lovejoy, N. R. (1996) Systematics of myliobatoid elasmobranchs: With emphasis on the phylogeny and historical biogeography of neotropical freshwater stingrays (Potamotrygonidae: Rajidae). Zoological Journal of the Linnean Society, 117: 207-257.

McEachran, J. D. and Aschliman, N. (2004) Phylogeny of the Batoidea. In: Carrier, J. C., Musick, J. A. and Heithaus, M. R. (eds), Biology of sharks and their relatives. CRC Press. pp. 79-113.

McEachran, J. D. and Dunn, K. A. (1998) Phylogenetic analysis of skates, a morphologically conservative clade of elasmobranchs (Chondrichthyes: Rajidae). Copeia, 1998: 271-290.

McEachran, J. D., Dunn, K. A. and Miyake, T. (1996) Interrelationships of the batoid fishes (Chondrichthyes: Batoidea). In: Stiassny, M. L. J., Parenti, L. R. and Johnson. G. D. (eds), Interrelationships of fishes. Academic Press, pp. 63-84.

Naylor, G. J. P., Ryburn, J. A., Fedrigo, O. and Lopez, A. (2005) Phylogenetic relationships among the major lineages of modern elasmobranchs. In: Hamlett, W. C. (ed), Reproductive Biology and Phylogeny of Chondrichthyes: Sharks, batoids and chimaeras, Science Publishers, pp. 1-21.

Rosenberger, L. J. (2001) Phylogenetic relationships within the stingray genus Dasyatis (Chondrichthyes: Dasyatidae). Copeia, 2001: 615-627.

Shimada, K. (2005) Phylogeny of lamniform sharks (Chondrichthyes: Elasmobranchii) and the contribution of dental characters to lamniform systematics. Paleontological Research, 9: 55-72.

Shirai, S. (1996) Phylogenetic interrelationships of neoselachians (Chondrichthyes: Euselachii). In: Stiassny, M. L. J., Parenti, L. R. and Johnson, G. D. (eds), Interrelationships of fishes. Academic Press, pp. 9-34.

Winchell, C. J., Martin, A. P. and Mallatt, J. (2004) Phylogeny of elasmobranchs based on LSU and SSU ribosomal RNA genes. Molecular Phylogenetics and Evolution, 31: 214-224.








S3 TREE BASED ON SHIRAI (1996) WINCHELL ET AL


0 TIMEBASED FORM OF CONTRACT HARMONIZED STANDARD FORM OF
030907 CONFERENCE FEEDBACK FORM COMMENTS (BASED ON 94 COMPLETED
1 2(I) A LOCALIZATION METHOD BASED ON THE HELMHOLTZ


Tags: (1996) higher-level, s. (1996), shirai, (1996), winchell, based