Table S1 Yeast strains
Strain |
Background |
Relevant genotype |
Aggregation phenotype* |
Reference |
YH1A |
S288C |
MATa ho::kanMX4 |
1 |
|
YH1C |
S288C |
MATα ho::kanMX4 |
1 |
Hu, et al. 2007 [15] |
YL1C |
YL1C |
MATα ho::kanMX4 |
3 |
Hu, et al. 2007 [15] |
YL1A |
YL1C |
MATa ho::kanMX4 |
3 |
Hu, et al. 2007 [15] |
S2 |
F1 segregant of YH1A×YL1C |
MATα ho::kanMX4 |
4 |
Hu, et al. 2007 [15] |
S5 |
F1 segregant of YH1A×YL1C |
MATα ho::kanMX4 |
4 |
Hu, et al. 2007 [15] |
S27 |
F1 segregant of YH1A×YL1C |
MATa ho::kanMX4 |
1 |
Hu, et al. 2007 [15] |
S57 |
F1 segregant of YH1A×YL1C |
MATa ho::kanMX4 |
4 |
Hu, et al. 2007 [15] |
S67 |
F1 segregant of YH1A×YL1C |
MATa ho::kanMX4 |
3 |
Hu, et al. 2007 [15] |
S95 |
F1 segregant of YH1A×YL1C |
MATα ho::kanMX4 |
1 |
Hu, et al. 2007 [15] |
S116 |
F1 segregant of YH1A×YL1C |
MATa ho::kanMX4 |
4 |
Hu, et al. 2007 [15] |
S123 |
F1 segregant of YH1A×YL1C |
MATα ho::kanMX4 |
3 |
Hu, et al. 2007 [15] |
S150 |
F1 segregant of YH1A×YL1C |
MATa ho::kanMX4 |
2 |
Hu, et al. 2007 [15] |
S152 |
F1 segregant of YH1A×YL1C |
MATa ho::kanMX4 |
2 |
Hu, et al. 2007 [15] |
YL1C-amn1⊿ |
YL1C |
MATα ho::kanMX4 amn1::HYGB |
1 |
This study |
YL1A-amn1⊿ |
YL1C |
MATa ho::kanMX4 amn1::HYGB |
1 |
This study |
YL1C-flo8⊿ |
YL1C |
MATα ho::kanMX4 flo8::HYGB |
2 |
This study |
YL1C-rga1⊿ |
YL1C |
MATα ho::kanMX4 rga1::HYGB |
2 |
This study |
YL1C-flo1⊿ |
YL1C |
MATα ho::kanMX4 flo1::HYGB |
2 |
This study |
YL1C- flo8⊿&rga1⊿ |
YL1C |
MATα ho::kanMX4 flo8::HYGB rga1::NAT |
2 |
This study |
YL1C- flo8⊿&RGA1T367P |
YL1C |
MATα ho::kanMX4 flo8::HYGB
|
Not assayed |
This study |
YL1C- flo8⊿&RGA1F415I |
YL1C |
MATα ho::kanMX4 flo8::HYGB rga1⊿::RGAF415I-YL1C$ |
Not assayed |
This study |
YL1C- flo8⊿&RGA1S658Y |
YL1C |
MATα ho::kanMX4 flo8::HYGB rga1⊿::RGAS658Y-YL1C$ |
Not assayed |
This study |
YL1C- flo8⊿&RGA1A866V |
YL1C |
MATα ho::kanMX4 flo8::HYGB rga1⊿::RGAA866V-YL1C$ |
Not assayed |
This study |
YL1C- amn1⊿&rga1⊿ |
F1 segregant of YL1A-amn1⊿×YL1C- flo8⊿&rga1⊿ |
MATα ho::kanMX4 amn1::HYGB rga1::NAT |
2 |
This study |
YL1C- amn1⊿&flo8⊿ |
F1 segregant of YL1A-amn1⊿×YL1C- flo8⊿&rga1⊿ |
MATα ho::kanMX4 amn1::HYGB flo8:: HYGB |
1 |
This study |
YL1C- amn1⊿&flo8⊿&rga1⊿ |
F1 segregant of YL1A-amn1⊿×YL1C- flo8⊿&rga1⊿ |
MATα ho::kanMX4 flo8:: HYGB amn1::HYGB rga1::NAT |
1 |
This study |
YL1C-AMN1A |
YL1C |
MATα ho::kanMX4 amn1⊿::AMN1-YH1A |
1 |
This study |
YL1C-FLO8A |
YL1C |
MATα ho::kanMX4 flo8⊿::FLO8-YH1A |
2 |
This study |
YL1C-RGA1A |
YL1C |
MATα ho::kanMX4 rga1⊿::RGA1-YH1A |
2 |
This study |
YH1A-AMN1C |
YH1A |
MATα ho::kanMX4 amn1⊿::AMN1-YL1C |
2 |
This study |
YH1A-flo1⊿ |
YH1A |
MATα ho::kanMX4 flo1::HYGB |
1 |
This study |
YH1A-flo8⊿ |
YH1A |
MATα ho::kanMX4 flo8::HYGB |
1 |
This study |
S2-flo1⊿ |
S2 |
MATα ho::kanMX4 flo1::HYGB |
2 |
This study |
S5-flo1⊿ |
S5 |
MATα ho::kanMX4 flo1::HYGB |
2 |
This study |
YL1C-AMN1 R226Q |
YL1C |
MATα ho::kanMX4 amn1⊿:: AMN1 R226Q-YH1A# |
1 |
This study |
YL1C-AMN1 H233R |
YL1C |
MATα ho::kanMX4 amn1⊿:: AMN1 H233R-YH1A# |
1 |
This study |
YL1C-AMN1 V368D |
YL1C |
MATα ho::kanMX4 amn1⊿:: AMN1 V368D-YH1A# |
3 |
This study |
AH109 |
host strain of yeast two hybrid |
MATa trp1-901 leu2-3,112 ura3-52 his3-200 gal4 gal80 LYS2::GAL1UAS-GAL1TATA-HIS3 GAL2UAS-GAL2TATA-ADE2 URA3::MEL1UAS-MEL1TATA-lacZ |
Not assayed |
James et al, 1996 [22] |
Y187 |
host strain of yeast two hybrid |
MATα ura3-52 his-200 ade2-101 trp1-901 leu2-3,112 gal4 met gal80 URA3::GALUAS-GAL1TATA-lacZ |
Not assayed |
Harper et al, 1993 [23] |
*: 1-4 represent the four categories of aggregation phenotype
#: AMN1XXXXX-YH1A represents a YH1A-derived AMN1 allele containing xxxxx mutation. For example, AMN1R226Q-YH1A is a YH1A-derived AMN1 allele containing R226Q mutation.
$ RGA1XXXXX-YL1C represents a YL1C-derived RGA1 allele containing xxxxx mutation. For example, RGA1T357P-YL1C is a YL1C-derived RGA1 allele containing T357P mutation.
Table S2. The 25 SNP markers add for high-resolution QTL mapping.
Marker Name |
Location |
Forward primer |
Backward primer |
Enzyme |
|
1 |
FLO1 |
203630 |
CTCATCGCTATATGTTTTTGG |
CGAGTAAACAACCTTCATTGG |
EcoRV |
2 |
YBR137 |
513196 |
ATTGGAAAGATTGACTTCTCG |
GATTGTATTAGGACAGCACCTC |
ApoI |
2 |
YBR149 |
540259 |
AGCCGCTCTACCCTTACCTC |
CTTGGTTCACCGTTGGCTTA |
BglⅡ |
2 |
YBR153 |
547627 |
GATGGGAATACCAAATACGACG |
ATTTATTACATTGGCACCTCCT |
AvaI |
2 |
YBR158 |
557219 |
CTCAACATCAGCGAAGTCAT |
TCCTTAAAATTATGGACGCT |
BsaI |
2 |
YBR168 |
572991 |
GGCGTCAATAAGGAGTGTTC |
ACAGCAGTAAACCTCCAAAG |
MspI |
2 |
YBR180 |
589832 |
TGATAAGGCTAGAAGGATGGT |
TTGAGTATCAGGAGAAGGGTC |
BglⅡ |
2 |
YBR189 |
604415 |
CGTAACTGATTTAATTCTTGGTC |
GGAAAATAAAATACTGTCCCAT |
Mph1103I |
2 |
YBR201 |
623814 |
TTAGGCGACATTCCTTTGGTC |
ACGTTCATTTGGTTTCCGTTC |
HinCⅡ |
2 |
YBR211 |
646858 |
TATTTAAGACGCCAAATGCTGT |
ATCGAAATTGTAACGAGTAGTAAGG |
MboI |
5 |
8s5 |
333160 |
GGAGTATGGTAGGAGGTAGA |
TACATCCATCACTACCGAAAC |
MseI |
5 |
FLO8 |
377244 |
CAATGGCAACGAATAGTGA |
TGTATGGTGGAATGGAAAA |
AccI/SalI |
5 |
11s5 |
467719 |
TATCCACCGTTATTCTCCC |
GACCTTCAAATAAATACTCGC |
TaiI |
5 |
12s5 |
517939 |
GACGCCAGCACTTTCCAG |
GGTGGTGACTATTCTTCGGCA |
TaaI |
15 |
YOR096 |
505528 |
CGTCATTCATTTCAAACCCAT |
CATTCTGGTATCGTCCCGTTC |
HaeIII |
15 |
YOR106 |
518802 |
AGGTGCCTTCTAACAGGTAACAC |
GCTGAACGAATATTATCATTTGA |
BseGI |
15 |
YOR119 |
550196 |
AGCGGATTTCTGGGACTTTAG |
TACCTGCAAAAGCGTGGTAAA |
AvaII |
15 |
YOR127 |
562241 |
TAACGATAGCGATGACAACTCTG |
AACGTTACTATCCTGTTTGCCTG |
BamHI |
15 |
YOR138 |
586852 |
TGCTGTCTTAGGACCCTCTGAAT |
TAGTGAACCTTCATCGCCACAG |
NdeI |
15 |
YOR143 |
602416 |
GATTTGGTCTATCAGTTGTCACA |
TTTTCAATACACTCCTCGCTCAT |
BfmI |
15 |
YOR153 |
619601 |
TTCCTACTTATGGTAATGTGCTA |
AAGGTATGATAATAAAAGCGAAC |
BsrGI |
15 |
YOR161 |
639042 |
CTTGATGAAGGATAAGCATACGC |
TGCAGTAATTAGCCGTAGTGGAC |
BsrBI |
15 |
YOR168 |
651538 |
AGGAGACTCCTTCGGACTATCAA |
CCTCGCCATTAGCCTTTACAT |
BglII |
15 |
YOR175 |
661971 |
TAAACCGACTCAAGTGGAACA |
AGCAGATAGCATATCGCAGTGTA |
ApoI |
15 |
YOR185 |
682563 |
ACTTTATCCAGGGAATTATCGA |
ACTTTATCCAGGGAATTATCGA |
BstBI |
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